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List of Applications:

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  • Autodock * - Autodock performs the docking of the ligand to a set of grids describing the target protein. Version 4.0.1.

  • MEME-MAST - MEME is a tool for discovering motifs in a group of related DNA or protein sequences. Version 3.5.7

  • MEME * - MEME is a tool for discovering motifs in a group of related DNA or protein sequences. Version 3.5.7

  • PDB2PQR * - PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format. Version 1.3.0.

  • APBS - Adaptive Poisson-Boltzmann Solver (APBS) is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Version 1.0.0

  • Autogrid * - AutoGrid pre-calculates the grids used by Autodock. Version 4.0.1.

  • Continuity-serial - This service runs Continuity in serial mode. Continuity is a problem-solving environment for multi-scale modeling and data analysis in bioengineering and physiology. Version 6.3.

  • APBS-Parallel - Adaptive Poisson-Boltzmann Solver (APBS) is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Version 1.0.0, parallel with mpich 1

  • Continuity-parallel - This service runs Continuity in parallel mode (the numbers of processors can be set by the user via command-line arguments). Continuity is a problem-solving environment for multi-scale modeling and data analysis in bioengineering and physiology. Version 6.3.

  • MAST - MAST is a tool for searching sequence databases using motifs. Version 3.5.7

*: a customized submission form is avaiable for this application